TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|299471650|emb|CBN76872.1| selenoprotein O homolog
[Ectocarpus siliculosus]
         (672 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 geno...    30   2.3  
gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno...    29   3.0  
gb|DS989788.1| Cryptosporidium muris RN66 scf_1113067259800 geno...    29   4.0  
gb|DS989738.1| Cryptosporidium muris RN66 scf_1106632373441 geno...    28   8.9  
gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 geno...    28   8.9  

>gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 genomic scaffold, whole
              genome shotgun sequence
          Length = 723783

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 47     HISSTAAFTYPAAATAAAATASVSHSNRNDRV 78
              +I  ++  +Y  A TA AAT+S SH   ND+V
Sbjct: 333707 NIKESSPKSYSQAGTATAATSSYSHIELNDKV 333612


>gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole
              genome shotgun sequence
          Length = 1324930

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/63 (25%), Positives = 39/63 (61%)
 Frame = +3

Query: 13     GLLLARASVRRGASSSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAATAAAATASVSHS 72
              G  L+ +S+   +SSSS    +++ SSS    +   SS+++ +  ++++++++++S S S
Sbjct: 513924 GTYLSSSSLSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 514103

Query: 73     NRN 75
              + N
Sbjct: 514104 SSN 514112



 Score = 27.7 bits (60), Expect = 8.9
 Identities = 18/95 (18%), Positives = 51/95 (53%)
 Frame = +1

Query: 2      SLASAVTSSAEGLLLARASVRRGASSSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAAT 61
              S++++        LL+ +     +SSSS +  +++ SSS    +   SS+++ +  ++++
Sbjct: 330868 SISNSGNFETFAFLLSSSFSSSPSSSSSSLSSSSSSSSSSSSSSSSSSSSSSLSSSSSSS 331047

Query: 62     AAAATASVSHSNRNDRVVTARPASRTAMSTAVDAA 96
              ++++++S   S+    ++T   +S  + S+ V  +
Sbjct: 331048 SSSSSSSSPSSSSTKSLLTLSSSSILSSSSLVSVS 331152


>gb|DS989788.1| Cryptosporidium muris RN66 scf_1113067259800 genomic scaffold,
           whole genome shotgun sequence
          Length = 694

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 24/101 (23%), Positives = 45/101 (44%)
 Frame = -3

Query: 2   SLASAVTSSAEGLLLARASVRRGASSSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAAT 61
           S +S+ +SS      + +    G SSS    G    SSSC  G    SS++      +  
Sbjct: 581 SCSSSCSSSCSSSCSSSSCSGMGCSSSGSCSGMGCSSSSCCSGMGCSSSSS-----CSGI 417

Query: 62  AAAATASVSHSNRNDRVVTARPASRTAMSTAVDAAATCSSS 102
             ++  S S S+      ++  +S ++  ++   +++CSSS
Sbjct: 416 GCSSRTSCSSSSSCSSSCSSCSSSCSSFCSSSSCSSSCSSS 294


>gb|DS989738.1| Cryptosporidium muris RN66 scf_1106632373441 genomic scaffold, whole
              genome shotgun sequence
          Length = 236830

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 25/109 (22%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
 Frame = -3

Query: 4      ASAVTSSAEGLLLARASVRRGASSSSRVFGAAAPSSSCRRGTHHISSTAAFTYPAAATAA 63
              +S+ +SS  G   + +S   G SSSS       PSSS        SS+++ + P  ++++
Sbjct: 235868 SSSSSSSLPGPSSSSSSSLPGPSSSSSS-SLPGPSSSSSSSLPGPSSSSSSSLPGPSSSS 235692

Query: 64     AATASVSHSNRNDRVVTARPASRTAM----STAVDAAATCSSSTLDTLP 108
              +++     S+ +  +     +S +++    S+++ ++++ SSS+  +LP
Sbjct: 235691 SSSLPGPSSSSSSSLPGPSSSSSSSLPGPSSSSLSSSSSSSSSSSSSLP 235545


>gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 genomic scaffold, whole
              genome shotgun sequence
          Length = 772423

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 21/96 (21%), Positives = 41/96 (42%)
 Frame = +1

Query: 100    SSSTLDTLPFDNRVIRELPVDPITDNYVRRVENACFSIVAPDPVVKPVMVAASNSALGLL 159
              S S L  +PF+N  + +   D    +    +++ C SIV    + K + + +SNS + ++
Sbjct: 383443 SDSNLLNIPFNNYDVFDTDEDYRNSSNFSSIDSGCQSIV----LYKGIDLPSSNSKISIV 383610

Query: 160    GLAAEEGQREDAAEYFSGNKLMPGAQPHAHAYCGHQ 195
                  E     +  +     K++P   P  H    H+
Sbjct: 383611 NRETEVPFIMELPKIEEVVKILPSINPIMHLGYSHK 383718


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,654,521
Number of Sequences: 84
Number of extensions: 52214
Number of successful extensions: 228
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 64
length of query: 672
length of database: 3,081,750
effective HSP length: 98
effective length of query: 574
effective length of database: 3,073,518
effective search space: 1764199332
effective search space used: 1764199332
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)